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化学工业与工程 2013, Vol. 30 Issue (6) :74-79    DOI:
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外部代谢物模拟在代谢工程中的应用指导
耿昭辉1, 2, 4, 郝彤1, 2, 4, 马红武3, 4
(1. 天津大学化工学院,天津 300072; 2. 教育部系统生物学重点实验室,天津 300072;3.中科院天津工业生物技术研究所,天津 300308; 4. 天津大学爱丁堡大学系统生物学联合实验室,天津 300072)
Application of External Metabolites Simulation in Metabolic Engineering
 GENG  Zhao-Hui1, 2 , 4 , HAO  Tong1, 2 , 4 , MA  Hong-Wu3, 4
(1. School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China;2. Key Laboratory of Systems Bioengineering, Ministry of Education, Tianjin University, Tianjin 300072, China; 3. Tianjin Institute of Industrial Biotechnology, Tianjin 300308, China; 4. EdinburghTianjin Joint Research Centre for Systems Biology and Synthetic Biology, Tianjin University, Tianjin 300072, China)

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摘要 外部代谢物是代谢网络模型中通过添加运输反应来平衡其在菌体内的通量的一类代谢物,比如底物、产物或副产物、信号分子等。首次通过对模型中运输反应的模拟来预测大肠杆菌和枯草芽孢杆菌在不同的生长状态下外部代谢物的优先排出顺序。部分模拟结果已经通过实验和文献数据得到证实。这一分析对应用代谢工程技术提高目标产物的产量有很大的指导意义。
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耿昭辉1
2
4
郝彤1
2
4
马红武3
4
关键词基因组尺度代谢网络模型   外部代谢物   代谢工程   优先顺序     
Abstract: The external metabolites that can be transferred to/from the cell can greatly affect the analysis results. In this paper, the genome-scale metabolic networks of E. coli and B. subtilis as examples were used to simulate the metabolic states at various conditions where different transport reactions for external metabolites were knocked out. The result showed the preference of different metabolic byproducts were related with their energy states, thus providing some guidance on engineering a strain to improve the production of different metabolic products.
Keywordsgenome-scale metabolic model   external metabolite   metabolic engineering   priority     
Received 2013-01-08;
Fund:

国家重点基础研究项目(2012CB725203,2011CBA00804);国家自然科学基金项目(NSFC-21106095)。

Corresponding Authors: 马红武,电话:(022)24828735,Email:ma_hw@tib.cas.cn。     Email: ma_hw@tib.cas.cn
About author: 耿昭辉(1985-),男,硕士研究生,研究方向为生物化工。
引用本文:   
耿昭辉1, 2, 4, 郝彤1, 2, 4, 马红武3, 4.外部代谢物模拟在代谢工程中的应用指导[J].  化学工业与工程, 2013,30(6): 74-79
GENG Zhao-Hui1, 2 , 4 , HAO Tong1, 2 , 4 , MA Hong-Wu3, 4 .Application of External Metabolites Simulation in Metabolic Engineering[J].  Chemcial Industry and Engineering, 2013,30(6): 74-79
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